IN-PERSON EVENT
PacBio Data Day Bern
IN-PERSON EVENT
The Next Generation Sequencing Platform (NGSP) at the University of Bern has had an incredible year. The vast amount of high-quality data generated using the PacBio Revio System has been a game-changer for the community, but it’s also sparked important questions about data analysis, tools, and pipelines.
To address these questions and foster collaboration, we’re excited to invite you to the Bern Data Day—an event dedicated to discussing, sharing, and learning from PacBio sequencing data.
This event is designed for bioinformaticians, researchers, and sequencing enthusiasts who work with PacBio data. Our focus will be on the technical aspects of data analysis, including:
Comparability: Insights into how Revio data stacks up against Sequel IIe
Structure & outputs: Reviewing folder structures, pipelines, and output formats
Tools in action: A closer look at PacBio tools and support available for analysis
Please note registration is required.
AGENDA
9:15-9:30 Welcome from the NGSP
9:30-10:00 PacBio overview
10:00-10:20 Amplicon Seq - Klaus Schläppi, University of Basel
10:20-10:40 Amplicon Seq - Hatice Akarsu Egger, University of Bern
10:40-11:00 Open discussion (Amplicon Seq) led by NGSP
11:00-11:15 Coffee break
11:15-11:35 WGS - Zuyao Liu, University of Bern
11:35-11:55 WGS - Giancarlo Tomio Gentikzentrum, Zürich
11:55-12:15 WGS - Alex Nater, University of Bern
12:15-13:45 Lunch on site
13:45-14:05 Microbial WGS - Sebastian Jordi, University of Bern
14:05-14:25 Microbial WGS - Laurent Falquet, University of Fribourg
14:25-14:40 Open discussion (WGS) led by NGSP
14:40-15:00 Kinnex RNA-Seq - Camille Cornet, University of Neuchatel
15:00-15:20 Kinnex RNA-Seq - Robert Gaultney, University of Bern
15:20-15:30 Short break
15:30-15:50 Kinnex scRNA-Seq - Micheál Ó Dálaigh, Galway University
14:50-16:10 Kinnex scRNA-Seq - Antoine Hanns, University of Basel
16:10-16:30 Open discussion (RNA-seq & scRNA-seq) led by NGSP
16:30-17:30 Coffee break
Register to attend:
Next Generation Sequencing Platform, University of Bern
